Recommendation (recommender) systems (RS) have played a significant role in both research and industry in recent years. In the area of academia, there is a need to help researchers discover the most appropriate and relevant scientific information through recommendations. Nevertheless, we argue that there is a major gap between academic state-of-the-art RS and real-world problems. In this paper, we present a novel multi-staged RS based on clustering, graph modeling and deep learning that manages to run on a full dataset (scientific digital library) in the magnitude of millions users and items (papers). We run several tests (experiments/evaluation) as a means to find the best approach regarding the tuning of our system; so, we present and compare three versions of our RS regarding recall and NDCG metrics. The results show that a multi-staged RS that utilizes a variety of techniques and algorithms is able to face real-world problems and large academic datasets. In this way, we suggest a way to close or minimize the gap between research and industry value RS.