This paper addresses the enhancement of multiple Unmanned Aerial Vehicle (UAV) swarm formation control in challenging terrains through the novel fractional memetic computing approach known as fractional-order velocity-pausing particle swarm optimization (FO-VPPSO). Existing particle swarm optimization (PSO) algorithms often suffer from premature convergence and an imbalanced exploration–exploitation trade-off, which limits their effectiveness in complex optimization problems such as UAV swarm control in rugged terrains. To overcome these limitations, FO-VPPSO introduces an adaptive fractional order β and a velocity pausing mechanism, which collectively enhance the algorithm’s adaptability and robustness. This study leverages the advantages of a meta-heuristic computing approach; specifically, fractional-order velocity-pausing particle swarm optimization is utilized to optimize the flying path length, mitigate the mountain terrain costs, and prevent collisions within the UAV swarm. Leveraging fractional-order dynamics, the proposed hybrid algorithm exhibits accelerated convergence rates and improved solution optimality compared to traditional PSO methods. The methodology involves integrating terrain considerations and diverse UAV control parameters. Simulations under varying conditions, including complex terrains and dynamic threats, substantiate the effectiveness of the approach, resulting in superior fitness functions for multi-UAV swarms. To validate the performance and efficiency of the proposed optimizer, it was also applied to 13 benchmark functions, including uni- and multimodal functions in terms of the mean average fitness value over 100 independent trials, and furthermore, an improvement at percentages of 29.05% and 2.26% is also obtained against PSO and VPPSO in the case of the minimum flight length, as well as 16.46% and 1.60% in mountain terrain costs and 55.88% and 31.63% in collision avoidance. This study contributes valuable insights to the optimization challenges in UAV swarm-formation control, particularly in demanding terrains. The FO-VPPSO algorithm showcases potential advancements in swarm intelligence for real-world applications.