v3 fatty acid desaturases are the enzymes responsible for the synthesis of trienoic fatty acids in plants. These enzymes have been mainly investigated using molecular, biochemical, and genetic approaches but very little is known about their subcellular distribution in plant cells. In this work, the precise subcellular localization of the v3 desaturase FAD7 was elucidated by immunofluorescence and immunogold labeling using a monospecific GmFAD7 polyclonal antibody in soybean (Glycine max) photoautotrophic cell suspension cultures. Confocal analysis revealed the localization of the GmFAD7 protein within the chloroplast; i.e. signals from FAD7 and chlorophyll autofluorescence showed specific colocalization. Immunogold labeling was pursued on cryofixed and freeze-substituted samples for convenient preservation of antigenicity and ultrastructure of membrane subcompartments. Our data revealed that the FAD7 protein was preferentially localized in the thylakoid membranes. Biochemical fractionation of purified chloroplasts and western analysis of the subfractions further confirmed these results. These findings suggest that not only the envelope, but also the thylakoid membranes could be sites of lipid desaturation in higher plants.Trienoic (TA) and dienoic fatty acids represent as much as 70% of total fatty acids from leaf or root lipids (Douce et al., 1990). They influence the function of biological membranes by maintaining their appropriate fluidity. Apart from this key role in cell function, TAs also serve as precursors of important plant hormones like jasmonates (JAs) that are involved in defense signaling against pathogen attack, the wound response, and plant development and adaptation to environmental stress (for review, see Iba, 2002;Schaller et al., 2005). Desaturase activity responsible for polyunsaturated fatty acid production was initially detected in microsomal and plastid preparations of various plant tissues (Ohlrogge and Browse, 1995). However, the difficulties in purifying these enzymes by biochemical methods hampered their identification. The molecular characterization of a collection of Arabidopsis (Arabidopsis thaliana) mutants defective in membrane lipid unsaturation allowed for the identification of desaturase genes, providing specific knowledge about their number, substrate specificity, and predicted location (Wallis and Browse, 2002). Thus, TAs are synthesized from dienoics by the activity of several v3 desaturases that are localized in two different cell compartments: FAD3 is specific of the endoplasmic reticulum while FAD7 and its cold-inducible isozyme, FAD8, are plastid specific (Wallis and Browse, 2002). However, with the exception of one plastidial enzyme, the stearoyl acyl-carrier protein (ACP) desaturase FAB2, which is the only soluble desaturase isolated up to now, no detailed studies investigating the activity and precise localization of these enzymes were performed mainly due to the difficulties in developing purification methods, the absence of specific antibodies, or in performing enzy...