We established a new indoor mesocosm facility, 12 fully controlled "Planktotrons", designed to conduct marine and freshwater experiments for biodiversity and food web approaches using natural or artificial, benthic or planktonic communities. The Planktotrons are a unique and custom-tailored facility allowing longterm experiments. Wall growth can be inhibited by a rotating gate paddle with silicone lips. Additionally, temperature and light intensity are individually controllable for each Planktotron and the large volume (600 L) enables high-frequency or volume-intense measurements. In a pilot freshwater experiment various trophic levels of a pelagic food web were maintained for up to 90 d. First, an artificially assembled phytoplankton community of 11 species was inoculated in all Planktotrons. After 22 d, two ciliates were added to all, and three Daphnia species were added to six Planktotrons. After 72 d, dissolved organic matter (DOM, an alkaline soil extract) was added as an external disturbance to six of the 12 Planktotrons, involving three Planktotrons stocked with Daphnia and three without, respectively. We demonstrate the suitability of the Planktotrons for food web and biodiversity research. Variation among replicated Planktotrons (n 5 3 minimum) did not differ from other laboratory systems and field experiments. We investigated population dynamics and interactions among the different trophic levels, and found them affected by the sequence of ciliate and Daphnia addition and the disturbance caused by addition of DOM.Enclosed experimental systems provide a highly valuable and widely used approach bridging small-scale laboratory experiments and large-scale field surveys (Petersen et al. 2010). Until now, most small-scale laboratory experiments investigating long-term dynamics or trophic interactions are performed in chemostats or Erlenmeyer flasks with relatively small (sample) volumes (J€ urgens et al. 1997;Fussmann et al. 2000;Huisman et al. 2002;Yoshida et al. 2003;Becks et al. 2010;Hardenbicker et al. 2015). While such highly controlled small-scale systems have the advantage of high replicability, they often suffer from stochastic effects, which arise from small population sizes in small sample volumes (Petersen et al. 2010). Also, the possibility to investigate volume-intense parameters is naturally limited in small-scale setups. This particularly complicates investigations of food webs, where features of the whole community or multiple trophic levels are of interest as predictors and/or responses, often including the necessity to cover dynamic interactions over time by repeated sampling. Over longer time periods (months to years), such dynamics can be resolved by monitoring of real ecosystems in the field and whole-system experiments, with the advantage of increased realism, yet missing opportunities for manipulation, replication, or isolated investigation of mechanisms. Experimental mesocosms, indoor as well as outdoor, offer a good compromise of the two extremes (Petersen et al. 2010). Mesoc...