The biological formation of inorganic materials with complex form (biominerals) is a widespread phenomenon in nature, yet the molecular mechanisms underlying biomineral morphogenesis are not well understood. Among the most fascinating examples of biomineral structures are the intricately patterned, silicified cell walls of diatoms, which contain tightly associated organic macromolecules. From diatom biosilica a highly polyanionic phosphoprotein, termed native silaffin-2 (natSil-2), was isolated that carries unconventional amino acid modifications. natSil-2 lacked intrinsic silica formation activity but was able to regulate the activities of the previously characterized silica-forming biomolecules natSil-1A and long-chain polyamines. Combining natSil-2 and natSil-1A (or long-chain polyamines) generated an organic matrix that mediated precipitation of porous silica within minutes after the addition of silicic acid. Remarkably, the precipitate displayed pore sizes in the range 100 -1000 nm, which is characteristic for diatom biosilica nanopatterns.T he biological formation of intracellular or extracellular skeletons made of amorphous hydrated SiO 2 (biosilica) is relatively frequent among the protists and also occurs in many higher plants (1, 2). To date the organic molecules involved in biosilica formation have mainly been studied in sponges and diatoms (3). From the silica spicules of the sponge Thetya aurantia, proteaselike proteins termed silicateins were characterized that catalyze silica formation from tetraethoxysilane in vitro (4, 5). Diatoms are unicellular algae that have the extraordinary capability to produce an enormous variety of biosilica structures (6). Each diatom species is characterized by a specific biosilica cell wall that contains regularly arranged slits or pores in the size range between 10 and 1,000 nm (nanopatterned biosilica). Biosilica morphogenesis takes place inside the diatom cell within a specialized membrane-bound compartment termed the silica deposition vesicle (SDV). It has been postulated that the SDV contains a matrix of organic macromolecules that not only regulate silica formation but also act as templates to mediate biosilica nanopatterning (7-9). Insight into the nature of this organic matrix has been gained through the characterization of diatom biosilica-associated peptides (silaffins) and long-chain polyamines (LCPA), both of which accelerate silica formation from a silicic acid solution in vitro (10-12). Although native silaffin-1A (natSil-1A) and LCPA, respectively, mediate the formation of unusual silica structures in vitro (networks of irregularly shaped silica bands and large spherical silica particles) (11, 12), none of these are akin to diatom biosilica nanopatterns.Recently, it was shown that phosphorylation of natSil-1A is essential for silica formation activity (12), leading to the speculation that phosphorylated components may be generally important for biosilica morphogenesis. Therefore, a search for additional silica-associated phosphoproteins, which are able...