We analyzed preparative and analytical aspects of the dynamic localization of Ca 2 + during cell stimulation, using a combination of quenched flow and energy-dispersive X-ray microanalysis (EDX). Calcium (or Sr, as a substitute) was retained as fluorides during freeze-substitution, followed by epoxide embedding. The quenched-flow used allowed analyses, during stimulation, in the subsecond time range. Sections of 500 nm were analyzed and no artificial Ca or Sr leakage was recognizable. We calculated a primary beam spread from 63 to 72 nm that roughly indicated the resolution of EDXlstructure correlation. These values are quite compatible with the size of potential structures of interest, e.g., Ca stores (~lOO-nm thickness) or cilia (-250-nm diameter). We used widely different standards to calibrate the ratio of CaK" net counts in relation to actual [Cal. Calibration curves showed a linear relationship and a detection limit of rCal = 2 mM, while rCal in cytosol was 3 mM and in stores was 43 mM, both in nonactivated cells. Eventually Sr 2 + can rapidly be substituted for Ca 2 + in the medium before and during stimulation, thus allowing one to determine Me 2 + fluxes. With our "model" cell, Paramecium, we showed that, upon stimulation (causing rapid Ca 2 + mobilization from subplasmalemmal stores), Ca was immediately exchanged for Sr in stores.1999 Academic Press