The aphid Acyrthosiphon pisum population is composed of different morphs, such as winged and wingless parthenogens, males, and sexual females. The combined effect of reduced photoperiodicity and cold in fall triggers the apparition of sexual morphs. In contrast they reproduce asexually in spring and summer. In our current study, we provide evidence that clonal individuals display phenotypic variability within asexual morph categories. We describe that clones sharing the same morphological features, which arose from the same founder mother, constitute a repertoire of variants with distinct behavioral and physiological traits. Our results suggest that the prevailing environmental conditions influence the recruitment of adaptive phenotypes from a cohort of clonal individuals exhibiting considerable molecular diversity. However, we observed that the variability might be reduced or enhanced by external factors, but is never abolished in accordance with a model of stochastically produced phenotypes. This overall mechanism allows the renewal of colonies from a few adapted individuals that survive drastic episodic changes in a fluctuating environment.[Supplemental material is available online at http://www.genome.org.]Aphids exhibit a complex mode of reproduction, combining parthenogenesis (spring/summer) and sexual activity (fall/winter) in species such as Acyrthociphon pisum (Dixon 1973;Blackman and Eastop 1984). Aphids thus constitute an excellent model system to investigate how this double reproductive system generates polyphenism, a generic concept used to describe the emergence of distinct morphs, such as winged, wingless, sexual female, and male (Blackman and Eastop 1984;Blackman 1987;Muller et al. 2001). Aphid morph distribution, particularly wing dimorphism, is influenced by environmental conditions, such as population density (crowding effects) (Sutherland 1969) and/or host plant vitality, as well as physical parameters including humidity, temperature, and photoperiodicity (Walters and Dixon 1982;Dixon 1998). This raises fascinating questions regarding the outcomes of alternative developmental mechanisms that cause morph switching in a predictable way (Stearns 1989;Nijhout 1999).Some aphid species are ''sexual'' lineages committed exclusively to sexual reproduction, others are ''facultative asexual'' lineages, which alternate between sexual and parthenogenetic modes depending on the season, while some others are obligate parthenogens (Delmotte et al. 2002;Le Trionnaire et al. 2008). This combined double system of reproduction is shared with many other species like Daphnia ( Despite some divergent reports, most authors seem to agree that sexual populations in aphids present a high allelic polymorphism of many genes and predominance of homozygous loci within individuals. In contrast, asexual populations seem to present less allelic polymorphism, but strong heterozygosity at most loci (Delmotte et al. 2002;Kanbe and Akimoto, 2009). It is largely assumed that organisms reproducing asexually should maintain lower g...