Atrial fibrillation (AF) is a progressive arrhythmia with underlying mechanisms that are not fully elucidated, partially due to lack of reliable and affordable animal models. Here, we introduce a system for long-term assessment of AF susceptibility (substrate) in ambulatory rats implanted with miniature electrodes on the atrium. Rats were subjected to excessive aldosterone (Aldo) or solvent only (Sham). An additional group was exposed to myocardial infarction (MI). AF substrate was tested two-and four-weeks post implantation and was also compared with implanted rats early post-implantation (Base). Aldo and MI increased the AF substrate and atrial fibrosis. In the MI group only, AF duration was correlated with the level of atrial fibrosis and was inversely correlated with systolic function. Unexpectedly, Shams also developed progressive AF substrate relative to Base individuals. Further studies indicated that serum inflammatory markers (IL-6, TNF-alpha) were not elevated in the shams. In addition, we excluded anxiety\depression due to social-isolation as an AF promoting factor. Finally, enhanced biocompatibility of the atrial electrode did not inhibit the gradual development of AF substrate over a testing period of up to 8 weeks. Overall, we successfully validated the first system for long-term AF substrate testing in ambulatory rats.Atrial fibrillation (AF) is a growing epidemic, entailing substantial economic costs, morbidity and mortality 1,2 . The pathophysiology of AF is multi-factorial in nature. It involves sources of sustained rapid electrical activity that can trigger arrhythmic episodes as well as pathological mechanisms which alter the electrical and structural substrate for AF in the atrial tissue 3-7 . A full understanding of the molecular mechanisms by which various underlying conditions and factors converge to progressively promote AF substrate is still lacking [8][9][10] . Drugs aimed to target the atrial remodeling (upstream therapies) are attractive new options to prevent AF perpetuation. However, early pre-clinical testing of such drugs is currently difficult due to the absence of reliable and affordable animal models.Traditionally, AF-related models have relied solely on large animals exposed to atrial tachypacing or heart failure 11 . However, over the last two decades, rodents have been increasingly used to study various mechanistic aspects in the pathophysiology of AF 12-18 , and the possibility of using rodents to test new therapies seems attractive. However, several technical limitations constrain the widespread utility of rodents in AF research. Particularly, the small and delicate rodent atria render the implantation of chronic pacing and recording