The diagnosis of infections caused by Plasmodium species is critical for understanding the nature of malarial disease, treatment efficacy, malaria control, and public health. The demands of field-based epidemiological studies of malaria will require faster and more sensitive diagnostic methods as new antimalarial drugs and vaccines are explored. We have developed a multiplex PCR-ligase detection reaction (LDR) assay that allows the simultaneous diagnosis of infection by all four parasite species causing malaria in humans. This assay exhibits sensitivity and specificity equal to those of other PCR-based assays, identifying all four human malaria parasite species at levels of parasitemias equal to 1 parasitized erythrocyte/l of blood. The multiplex PCR-LDR assay goes beyond other PCR-based assays by reducing technical procedures and by detecting intraindividual differences in species-specific levels of parasitemia. Application of the multiplex PCR-LDR assay will provide the sensitivity and specificity expected of PCR-based diagnostic assays and will contribute new insight regarding relationships between the human malaria parasite species and the human host in future epidemiological studies.PCR diagnosis of malaria species infections exhibits sensitivity and specificity superior to those of blood smear microscopy, which is considered the "gold standard," and antigencapture rapid diagnostic tests (RDTs) (22, 32). Additional practical strengths of the PCR include the ability to evaluate samples that have been archived as whole blood or on microscope slides (25) under various conditions for years and compatibility with the widely used 96-well plate, automation-ready formats.The superior sensitivity of the PCR has greatly expanded the capability to understand malaria parasite parasitism beyond the limits of blood smear microscopy. In clinical settings equipped with appropriate instrumentation, PCR-based diagnostic strategies enable Plasmodium species identification, despite parasitemias at levels below blood smear sensitivity limits. The results obtained by these more sensitive assays are often useful in making specific treatment decisions to kill species (Plasmodium vivax and P. ovale) that are capable of establishing dormant liver stages and subsequent malarial relapses. In many epidemiological studies, evidence of low-level infection consistently reported through PCR detection of subpatent infections suggests that the prevalence of malaria parasite infection is higher than that estimated by evaluation of blood smears (2,3,17,20,29,33). Similar observations of this nature have suggested that infection by all four parasite species causing malaria in humans is not uncommon in some regions where malaria is endemic (20,29) and that the prevalence of P. malariae and P. ovale is higher than that estimated previously (20,29,33