An approach to the validation of linker strategies for polyketide natural products with few or no obvious handles for linker attachment, and its application to dictyostatin are described. Analogs in which the C(6) and C(12) methyl groups were replaced by 4-azidobutyl groups were prepared and shown to retain the low nM potency of dictyostatin. Further, conjugation of the C(6)-analog with a cyclooctyne resulted in only minor attenuations in potency. Together, these results shed light on the binding of dictyostatin to β-tubulin, establish a validated linker strategy for dictyostatin, and set the stage for the synthesis and study of dictyostatin conjugates.