This study presents a centralized control scheme that coordinates parallel operations of power conditioning system (PCS) for the grid interactions of electric vehicles (EVs) in EV charge-discharge and storage integration station. Key issues for the control and operation of PCS under various operation modes are discussed, including vehicle to grid (V2G) mode, stand-alone mode and seamless transfer mode. The intelligent multi-mode charge-discharge method is utilized for the V2G mode, and the parallel control method based on communication network is adopted for the standalone mode. In addition, a novel seamless transfer strategy is proposed, which is able to implement PCS transition between V2G mode and stand-alone mode. The detailed process of the seamless transfer between the two modes is illustrated. Experimental results are presented to show the performance and feasibility of this strategy.