Abstract. Salience is a broad and widely used concept in neuroscience whose neuronal correlates, however, remain elusive. In behavioral conditioning, salience is used to explain various effects, such as stimulus overshadowing, and refers to how fast and strongly a stimulus is associated to a conditioned event. Here, we show that sounds of diverse quality, but equally intense and perceptually detectable, recruit surprisingly different levels of population activity in mouse auditory cortex. When using these sounds as cues in a Go/NoGo discrimination task, the degree of cortical recruitment matches the salience parameter of a reinforcement learning model used to analyze learning speed. Moreover, we confirm a generic prediction of the model by training mice to discriminate light-sculpted optogenetic activity patterns in auditory cortex verifying that cortical recruitment causally determines association or overshadowing of the stimulus components. This demonstrates that cortical recruitment captures major aspects of stimulus salience during reinforcement learning.peer-reviewed)