An isorepressor of the gal regulon in Escherichia coli, GalS, has been purified to homogeneity. In vitro DNase I protection experiments indicated that among operators of the gal regulon, GalS binds most strongly to the external operator of the mgl operon, which encodes the high-affinity -methylgalactoside galactose transport system, and with less affinity to the operators controlling expression of the gal operon, which codes for enzymes of galactose metabolism. GalS has even less affinity for the external operator of galP, which codes for galactose permease, the major low-affinity galactose transporter in the cell. This order of affinities is the reverse of that of GalR, which binds most strongly to the operator of galP and most weakly to that of mgl. Our results also show that GalS, like its homolog, GalR, is a dimeric protein which in binding to the bipartite operators of the gal operon selectively represses its P1 promoter. Consistent with the fact that GalR is the exclusive regulator of the low-affinity galactose transporter, galactose permease, and that the major role of GalS is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, we found that the DNA binding of GalS is 15-fold more sensitive than that of GalR to galactose.The genes and operons comprising the gal regulon in Escherichia coli enable the cell to use galactose both as a source of energy and as a source of intermediates necessary for biosynthetic glycosylation reactions (1). The polycistronic gal operon encodes enzymes participating in the Leloir pathway for galactose metabolism, while the mgl operon and the galP gene encode the high-affinity -methylgalactoside transport system and the galactose permease, respectively, the two major galactose uptake systems in E. coli (18). The expression of the enzymes involved with the Leloir pathway and galactose transport activities is regulated by two highly homologous, galactose-sensitive repressors, GalR and GalS, encoded by the genes galR and galS, respectively. These repressors are members of the GalR-LacI family of transcriptional regulators in E. coli (17). The precise role played by each repressor in regulating expression of the genes of the regulon is unclear. GalR, the first of these proteins to be identified and which has been purified, functions as the major repressor of the gal operon and is sufficient for repression of its genes in the absence of galactose (1). GalS was identified because in strains in which galR was deleted, the gal operon could be further induced by galactose, a phenomenon called ultrainduction (9). Subsequent genetic studies indicated that GalS functions to control its own expression and that of the -methylgalactoside transport system, the galactose transporter in E. coli (16). In order to obtain a better understanding of the roles of GalR and GalS in coordinating both galactose metabolism and uptake, we have purified GalS and studied the interaction of both of these repressors with the regulatory sequences in the regulon. Our re...