The minichromosome maintenance (MCM) proteins, a family of six conserved polypeptides found in all eukaryotes, are essential for DNA replication. The archaeon Methanobacterium thermoautotrophicum ⌬H contains a single homologue of MCM with biochemical properties similar to those of the eukaryotic enzyme. The amino acid sequence of the archaeal protein contains a putative zinc-binding domain of the CX 2 CX n CX 2 C (C 4 ) type. In this study, the roles of the zinc finger domain in MCM function were examined using recombinant wild-type and mutant proteins expressed and purified from Escherichia coli. The protein with a mutation in the zinc motif forms a dodecameric complex similar to the wild-type enzyme. The mutant enzyme, however, is impaired in DNA-dependent ATPase activity and single-stranded DNA binding, and it does not possess helicase activity. These results illustrate the importance of the zinc-binding domain for archaeal MCM function and suggest a role for zinc binding in the eukaryotic MCM complex as well, since four out of the six eukaryotic MCM proteins contain a similar zinc-binding motif.
The minichromosome maintenance (MCM)1 genes encode a family of six proteins (MCM2 to -7) first identified by their essential role in the maintenance of ARS-containing minichromosomes in Saccharomyces cerevisiae (1, 2). MCM homologues have been identified in all eukaryotes, and all are essential for DNA replication (1, 3-7). The recruitment of these proteins onto replication origins during the G 1 phase of the cell cycle is essential for the formation of a prereplicative complex and initiation of DNA synthesis (8 -12). In addition to the heterohexameric structure MCM2/3/4/5/6/7, found in vivo and in vitro, several additional MCM complexes have been identified (13-16). Biochemical studies in yeast and mammals have shown that a dimeric complex of the MCM4/6/7 heterotrimer contains 3Ј-5Ј DNA helicase activity, single-stranded DNA (ssDNA) binding, and DNA-dependent ATPase activities (15,17,18). Both MCM2 and MCM3/5 were shown to inhibit the helicase activity of MCM4/6/7 and thus were suggested to play regulatory roles (15,19). Both genetic and biochemical data suggest that the MCM4/6/7 complex is the eukaryotic replicative helicase and that the other MCM polypeptides may play regulatory roles (15,16,19).Zinc fingers were first identified as zinc-binding domains important for protein-DNA interactions (20, 21). They contain conserved Cys and His residues, and to date more than 10 classes have been biochemically characterized, and their structures have been determined (reviewed in Refs. 22-25). Since their discovery, zinc finger domains have been implicated in diverse functions, including ssDNA and double-stranded DNA (dsDNA) binding, RNA binding, and protein-protein interactions (reviewed in Refs. 24 and 26). The primary amino acid sequences of the eukaryotic MCM2, -4, -6, and -7 proteins from all organisms contain a putative zinc finger motif of the C 4 type, either CX 2 CX n CX 2 C (MCM2) or CX 2 CX n CX 4 C (MCM4, -6, an...