The role of the a subunit of Escherichia coli RNA polymerase in transcription activation by positive factors was investigated using two reconstituted mutant RNA polymerases (containing C-terminally truncated a subunits) and three positive factors [the cAMP receptor protein (CRP), OmpR, and PhoB]. The mutant RNA polymerases did not respond to transcription activation by activator proteins that bind upstream of the respective promoters. Transcription by these mutant enzymes was, however, activated in the cases where activators bind to target sites that overlap the promoter -35 region. Two different mechanisms are proposed for the positive control of transcription by activator proteins, one requiring the C-terminal domain of the a subunit, and the other not requiring it.Positive control of transcription is one of the common mechanisms of regulated gene expression in both prokaryotes and eukaryotes. Two mechanisms have been proposed for this activation, (i) lacking the C-terminal 73 or 94 amino acid residues (9). The mutant RNA polymerase core enzymes containing C-terminally truncated a subunits exhibited essentially the same specific activity of RNA synthesis as the native enzyme. After addition of o70 subunit, these mutant holoenzymes were able to initiate transcription accurately from certain promoters. However, they did not respond to transcription activation by cAMP/CRP at two type I CRP-dependent promoters on the lac and uxuAB genes (9). These results led us to conclude that the C-terminal domain (residues 257-329) ofthe a subunit is involved in the response of RNA polymerase to transcriptional activation by cAMP/CRP. Phenotypes resulting from known rpoA mutations also suggest that the a subunit is involved in positive control by certain transcription activators (10-14).In the present study, we extended this line of experiments to type II CRP-dependent promoters. Most CRP-dependent promoters can be classified into two types depending on the location of the CRP site relative to the transcription start site (15, 16). Type I promoters are associated with a CRP site that is separated from the basic promoter (-10 and -35 signals) and include the lac P1 and uxuAB promoters. On type II promoters, the CRP site is centered around -41/-42 and therefore partially overlaps the basic promoter at the -35 region. In addition, we examined the responsiveness of the mutant RNA polymerases to transcription stimulation by two other activators, PhoB, an activator of the phosphate regulon, and OmpR, which is involved in osmoregulation of the ompF and ompC genes (reviewed in ref. 17). The results suggest the presence oftwo different mechanisms for positive control of transcription by activator proteins: one requires the C-terminal domain of the a subunit, and the other does not.
MATERIALS AND METHODSRNA Polymerases. Wild-type and mutant RNA polymerases were assembled in vitro from individually overproduced and purified (3, (3', and (770 subunits and one of the wild-type or mutant a subunits, as described by Igarashi and...