Cell-based
sensors are useful for many synthetic biology applications,
including regulatory circuits, metabolic engineering, and diagnostics.
While considerable research efforts have been made toward recognizing
new target ligands and increasing sensitivity, the analysis and optimization
of turn-on kinetics is often neglected. For example, to our knowledge
there has been no systematic study that compared the performance of
a riboswitch-based biosensor versus reporter for the same ligand.
In this study, we show the development of RNA-based fluorescent (RBF)
biosensors for guanidine, a common chaotropic agent that is a precursor
to both fertilizer and explosive compounds. Guanidine is cell permeable
and nontoxic to E. coli at millimolar concentrations,
which in contrast to prior studies enabled direct activation of the
riboswitch-based biosensor and corresponding reporter with ligand
addition to cells. Our results reveal that the biosensors activate
fluorescence in the cell within 4 min of guanidine treatment, which
is at least 15 times faster than a reporter derived from the same
riboswitch, and this rapid sensing activity is maintained for up to
1.6 weeks. Together, this study describes the design of two new biosensor
topologies and showcases the advantages of RBF biosensors for monitoring
dynamic processes in cell biology, biotechnology, and synthetic biology.