Defossilization of the global energy system requires a transition towards intermittent renewable energy sources and approaches that enable efficient conversion of primary energy sources into electrical energy. Due to their high efficiency in converting chemical into electrical energy and vice versa, solid oxide cell (SOC) systems provide solutions for both of these aspects. However, mode transitions in SOC operation require operating strategies to ensure that thermal gradients in the reactors are suppressed. In this study, two researched cases utilizing SOC’s are presented, based on simulation studies and experiments with an SOC multi-reactor module. The transient module model is validated in 75 kW electrolysis and polygeneration, and applied to analyze the effect of internal steam methane reforming on the temperature profile of the reactors. Subsequently, it is coupled with a validated Li-ion battery model, to test a rule-based power split control strategy suitable for a demand curve characteristic of a ship.