We describe the isolation of a novel protein from the conditioned medium of human articular cartilage chondrocytes in primary culture. This 39-kDa protein has the N-terminal sequence YKL, which we have termed YKL-39. The 1434-nucleotide sequence of the YKL-39 cDNA predicts a 385-residue initial translation product and a 364-residue mature YKL-39. The amino acid sequence of YKL-39 is most closely related to YKL-40, followed by macrophage chitotriosidase, oviductal glycoprotein, and macrophage YM-1. All five proteins share significant sequence identity with bacterial chitinases and have the probable structure of an (␣) 8 barrel. YKL-39 lacks the active site glutamate, which is essential for the activity of chitinases, and as expected has no chitinase activity. The highest level of YKL-39 mRNA expression is seen in chondrocytes, followed by synoviocytes, lung, and heart. YKL-39 accounts for 4% of the protein in chondrocyte-conditioned medium, prostromelysin accounts for 17%, and YKL-40 accounts for 33%. In contrast to YKL-40, YKL-39 is not a glycoprotein and does not bind to heparin.In this study we report the discovery of a new member of the mammalian protein family related in sequence to bacterial chitinases. This protein family has an (␣) 8 barrel structure (1, 2) and includes a protein secreted from human macrophages that does have chitinase activity, which is termed chitotriosidase (3), and three proteins with no presently known enzymatic activity, YKL-40 (4), YM-1 (GenBank TM /EBI accession number M94584), and oviductal glycoprotein (6). Because the new member of this family, which we have termed YKL-39, is more closely related in size and sequence to YKL-40 than to other members of this family, it is useful to summarize research on YKL-40 as a background for the present investigation.YKL-40 is a 40-kDa glycoprotein that was first discovered as a heparin-binding protein secreted from bovine breast tissue during the massive tissue involution that follows the cessation of lactation (7). YKL-40 was subsequently discovered as a heparin-binding protein in the conditioned medium of human synoviocytes (8), chondrocytes (4, 9), and the MG-63 osteosarcoma cell line (10). YKL-40 has also been discovered as a heparin-binding protein expressed by porcine vascular smooth muscle cells undergoing a differentiation transition (11) and as a protein expressed selectively by murine mammary tumors initiated by neu/ras oncogenes (12). The present studies were initiated to further examine the expression of YKL-40 by human articular cartilage chondrocytes in culture. In the course of these studies YKL-39 was found as a protein that copurified with YKL-40.We report here the discovery, purification, characterization, and sequence of human YKL-39.
MATERIALS AND METHODSIsolation and Culture of Chondrocytes and Synoviocytes-Chondrocytes and synoviocytes were obtained from Martin Lotz, director of the University of California, San Diego osteoarthritis cell culture facility and were isolated and cultured essentially as described (13). C...