The genome of Mus musculus contains multiple copies (500-1000) of DNA sequences related to the 35S RNA of intracisternal type A particles (LAPs). Using labeled IAP RNA as a probe in blot-hybridization experiments, we have identified a characteristic electrophoretic pattern of reactive fragments generated by restriction endonuclease cleavage of mouse DNA. From the genomic blots, we deduced a composite restriction map for a 6.5-to 7-kilobase (kb) DNA (1,2). These sequences were contained in polyadenylylated RNA molecules of several discrete sizes ranging from 29S to 35S (3). All of the RNA species contain related sequences as judged by hybridization studies (2), and both the 35S RNA from neuroblastoma A particles and the predominant 29S species from myeloma particles have been shown to direct the cell-free synthesis of the major (73,000-dalton) A-particle structural protein (3). There are no close sequence homologies between the genomic RNA of IAPs and those of representative type B and type C viruses of M. musculus (1, 2, 4, 5). However,-IAPs do share partial sequence homology (6) with a distinctive class of.retrovirus endogenous to the Asian murine species M. cervicolor and M. caroli (7,8).Hybridization kinetics have indicated that DNA sequences homologous to IAP RNAs are reiterated to the extent of 500 or more copies per haploid genome of both somatic and germ cells of M. musculus (6, 9). On the other hand, only'20-25 copies of the related genes were found in the DNAs of M. cervicolor and M. caroli (6-8, 10), from whose progenitors M. musculus diverged about 5 million years ago (7, 11). Thus, the evolution of The publication costs of this article were defrayed in part by page charge payment. This article must therefore be hereby marked "advertisement" in accordance with 18 U. S. C. §1734 solely to indicate this fact.
3571M. musculus appears to have been accompanied by a striking amplification of IAP-related genetic information, which now makes up about 0.3% of the total cellular DNA.In situ hybridization studies show that these sequences are distributed among many, perhaps all, of the mouse chromosomes (9). Beyond this, there has been no information about the internal structure of the TAP genes, their arrangement within the mouse genome, and the degree of variation among individual members of this extensive genetic family. This report describes results of studies addressed to these questions.MATERIALS AND METHODS Blot Hybridization. High molecular weight DNA was prepared (9) from BALB/c mouse myeloma MOPC-104E, a neuroblastoma tissue culture line N4 of A/Jax origin, livers of NIH Swiss mice, and the F9 teratoma cell line derived from a tumor in strain 129 mice (12). DNAs were digested to completion with restriction endonucleases (New England BioLabs) and the digests were electrophoresed in agarose gels. DNA fragments were recovered from the gels by binding on glass microbeads (13) or were transferred to cellulose nitrate sheets by a modification (14) of the Southern blot technique (15). For use a...