We present a novel and time-efficient method for intracoronary lumen detection which produces three-dimensional (3D) coronary arteries using Optical Coherence Tomographic (OCT) images. OCT images are acquired for multiple patients and longitudinal cross-section (LOCS) images are reconstructed using different acquisition angles. The lumen contours for each LOCS image are extracted and translated to 2D cross-sectional images. Using two angiographic projections the centerline of the coronary vessel is reconstructed in 3D and the detected 2D contours are transformed to 3D and placed perpendicular to the centerline. To validate the proposed method, 613 manual annotations from medical experts were used as gold standard. The 2D detected contours were compared to the annotated contours and the 3D reconstructed models produced using the detected contours were compared to the models produced by the annotated contours. Wall shear stress (WSS), as dominant hemodynamics factor, was calculated using computational fluid dynamics and 844 consecutive 2-mm segments of the 3D models were extracted and compared to each other. High Pearson’s correlation coefficients were obtained for the lumen area (r=0.98) and local WSS (r=0.97) measurements, while no significant bias with good limits of agreement was shown in the Bland-Altman analysis. The overlapping and non-overlapping areas ratio between experts’ annotations and presented method was 0.92 and 0.14, respectively. The proposed computer-aided lumen extraction and 3D vessel reconstruction method is fast, accurate and likely to assist in a number of research and clinical applications.