In recent decades, the concentration of pharmaceutical residues and narcotics has increased in municipal wastewater. Decomposing these toxic organic chemicals is challenging and requires new techniques and advanced catalytic materials. Precursors of metal composites were prepared by calcining an aqueous suspension of natural clay–based kaolin with Mn and Cu, binding chemically the active metals to the aluminosilicate frame structure of the precursor. The specific surface area of Mn and Cu composite was 67 m2/g and 81 m2/g, respectively. The mechanical durability was determined in terms of compressive strength, and 3.3 MPa and 3.6 MPa were obtained, respectively. In the CWAO of pharmaceutical wastewater, Mn composite gave the highest conversions of 54% and 46% of the chemical oxygen demand (COD) and total organic carbon (TOC), respectively. Metal composites were mechanically and chemically highly durable, inducing only 1.2 wt.% and 1.4 wt.% mass loss. In CWAO, Mn and Cu composite increased the biodegradation of organic species in the wastewater by 65% and 75%, respectively.