“…Many crucial genes related to VW, FW and RKN resistance were found in MQTLs regions, including four copies of GhnsLTPsA10 in MQTL-A05.1, MQTL-A10.1 and MQTL-D01.1 [ 45 ], two copies of CG02 in MQTL-A10.1 [ 46 ], GbSBT1 in MQTL-A03.1 [ 47 ], GhDHS1 in MQTL-A05.2 [ 48 ], GhPAO in MQTL-A08.1 [ 49 ], GhDSC1 in MQTL-A10.1 [ 50 ], GhPME31 in MQTL-A11.1 [ 51 ], GhMKK10 and GhSOBIR1b in MQTL-A12.2 [ 52 , 53 ], GhPGIP1 in MQTL-D01.1 [ 54 ], GhSOBIR1 in MQTL-D03.1 [ 52 ], GhHb1 and GhWAKL in MQTL-D04.2 [ 55 , 56 ], GhRLP31 in MQTL-D07.1 [ 52 ], and GhPMEI3 and GhPME2 in MQTL-D11.1 [ 51 ] (Table S4). All genes co-localized with MQTLs are related to hormone regulation, reactive oxygen species (ROS), xylem development, pathogen-associated molecular patterns (PAMP), mitogen-activated protein kinase (MAPK) cascades pathway, and synthesis of disease resistant proteins (Table S2).…”