ARTICLE SUMMARYCell culture model systems are utilized for their ease of use, relative inexpensiveness, and potentially limitless sample size. Reliable results cannot be obtained, however, when cultures contain contamination. This report discusses the observation and identification of mobile black specks observed in multiple cell lines. Cultures of the contamination were grown, and DNA was purified from isolated colonies. The 16S rDNA gene was PCR amplified using primers that will amplify the gene from many genera, and then sequenced. Sequencing results matched the members of the genus Achromobacter, bacteria common in the environment. Achromobacter species have been shown to be resistant to multiple antibiotics. Attempts to decontaminate the eukaryotic cell culture used multiple antibiotics at different concentrations. The contaminating Achromobacter was eventually eliminated, without permanently harming the eukaryotic cells, using a combination of the antibiotics ciprofloxacin and piperacillin.
Keywordsachromobacter; bacteria; cell culture; contamination
INTRODUCTIONCell culture contamination is a universal challenge facing most researchers at one time or another in their career. An obvious consequence of contamination is loss of experiments, time, and money. Contamination can be difficult to identify, particularly with a transient workforce as often the case in research and, especially, academic, settings. However, if cell culture contamination remains unidentified, it can result in erroneous results not actually due to treatments but rather the cellular reaction to the contaminate itself.Researchers take multiple steps, including aseptic culture handling, filter sterilization, purchasing of liquid media and solutions, and inclusion of antibiotics in the growth media, to keep the cultures free of unwanted organisms. An additional complication arises when Publisher's Disclaimer: This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. Several online science blogs discuss a cell culture contaminate that looks like black specks in the cell culture (http://www.cellculturechat.com/i.html/T3470/H3448.html; http://www.protocol-online.org/forums/index.php? s=bc4fecd655ee6898191ab6ed43f5a5a7&showtopic=9373&pid=30730&st=0entry30730 ). The researchers on these blogs describe black dots that fidget or swim and look more like rods than dots. Our laboratory has experienced sporadic cell culture contamination fitting this description. Here we report the identification of a bacterial cell culture contaminate, a member of the Achromobacter genus, matching anecdotal descriptions of cell culture contaminants of multip...