Duck Tembusu virus (DTMUV) is an emerging pathogenic flavivirus responsible for massive economic losses in the duck industry. However, commercially inactivated DTMUV vaccines have been ineffective at inducing protective immunity in ducks. The widely used adjuvant cytosine-phosphate-guanine oligodeoxynucleotides (CpG ODNs) reportedly improve humoral and cellular immunities in animal models. However, its effectiveness in DTMUV vaccines requires validation. Here, we assessed the protective efficacy of pUC18-CpG as an adjuvant in an inactivated live DTMUV vaccine in ducks. Our results revealed that the serum hemagglutination inhibition (HI) antibody titers, positive rates of anti-DTMUV antibodies, the concentration of serum cytokines, and protection efficacy were significantly increased in ducks immunized with pUC18-CpG compared to that in the control group. Moreover, ducks immunized with a full vaccine dose containing a half dose of antigen supplemented with 40 µg of pUC18-CpG exhibited the most potent responses. This study suggests that pUC18-CpG is a promising adjuvant against DTMUV, which might prove effective in treating other viral diseases in waterfowl.Viruses 2020, 12, 238 2 of 11 can also infect humans [14]. Therefore, DTMUV can pose a severe economic burden on the poultry industry while simultaneously constituting a public health threat.Although an effective attenuated DTMUV vaccine candidate has been reported [15], immunization with this type of vaccine hampers the differentiation of infected and vaccinated ducks based on serology. In addition, the cost of attenuated vaccines is prohibitive, and improper administration may cause potential virulence reversion [16]. Alternatively, an inactivated live DTMUV vaccine is available; however, it has been shown to induce low protective antibody titers in ducks and, thus, is not completely effective in protecting immunized ducks [17]. A more cost-effective and safer DTMUV vaccine variant is, therefore, urgently needed to tackle this emergent disease and assist the duck industry.The bacterial genomic DNA, or synthetic unmethylated cytosine-phosphate-guanine oligodeoxynucleotides (CpG ODNs), which contain bioactive CpG motifs, elicit immunostimulatory effects and are considered safe and effective immunopotentiator adjuvants. These molecules reportedly enhance humoral and cellular immunity in humans and animals [18][19][20]. It has now been recognized that the human immune system, similar to other vertebrates, identifies unmethylated CpG dinucleotides in specific situations involving dangerous stimuli or infection, thereby activating immune response cascades [21]. Moreover, studies have shown that when the exogenous CpG motif is inserted into an empty plasmid vector (pUC-18), it significantly enhances the immune response to a vaccine [22,23]. To the best of our knowledge, CpG ODNs have preliminarily been explored as immunostimulants or adjuvants in waterfowl (including ducks), and satisfactory results have been achieved [24,25].This study evaluated the adjuvant potenti...