Meiotic crossover formation involves the repair of programmed DNA double-strand breaks (DSBs) and synaptonemal complex (SC) formation. Completion of these processes must precede the meiotic divisions in order to avoid chromosome abnormalities in gametes. Enduring key questions in meiosis have been how meiotic progression and crossover formation are coordinated, whether inappropriate asynapsis is monitored, and whether asynapsis elicits prophase arrest via mechanisms that are distinct from the surveillance of unrepaired DNA DSBs. We disrupted the meiosis-specific mouse HORMAD2 (Hop1, Rev7, and Mad2 domain 2) protein, which preferentially associates with unsynapsed chromosome axes. We show that HORMAD2 is required for the accumulation of the checkpoint kinase ATR along unsynapsed axes, but not at DNA DSBs or on DNA DSBassociated chromatin loops. Consistent with the hypothesis that ATR activity on chromatin plays important roles in the quality control of meiotic prophase, HORMAD2 is required for the elimination of the asynaptic Spo11 -/-, but not the asynaptic and DSB repair-defective Dmc1 -/-oocytes. Our observations strongly suggest that HORMAD2-dependent recruitment of ATR to unsynapsed chromosome axes constitutes a mechanism for the surveillance of asynapsis. Thus, we provide convincing evidence for the existence of a distinct asynapsis surveillance mechanism that safeguards the ploidy of the mammalian germline.[Keywords: asynapsis surveillance; meiotic prophase checkpoint; ATR; HORMA domain; meiosis; aneuploidy] Supplemental material is available for this article. Received January 30, 2012; revised version accepted March 19, 2012. Orderly chromosome segregation during the first meiotic division requires that homologous maternal and paternal chromosomes (called homologs) become physically linked, thereby forming so-called bivalents during the first meiotic prophase (Page and Hawley 2003). In most organisms, including mammals, meiotic recombination generates reciprocal exchanges, called crossovers (COs), between homologous DNA sequences. Interhomolog COs and sister chromatid cohesion together form the basis of the physical linkages, called chiasmata, that connect pairs of homologs during the first meiotic metaphase. Therefore, at least one CO must form between each pair of homologs to ensure correct segregation during the first meiotic division.CO formation requires that homologs find each other. To achieve this, double-strand breaks (DSBs) are actively introduced into the genome at the beginning of prophase by the SPO11 enzyme (Keeney et al. 1997;Baudat et al. 2000;Romanienko and Camerini-Otero 2000). This is followed by the resection of DSB ends, which creates 39 ssDNA overhangs (Neale et al. 2005). The RAD51 and DMC1 recombinases bind single-stranded DSB ends and assist homology search through promoting strand invasion of resected DSB ends into homologous DNA sequences (Baudat and de Massy 2007). Several DSB ends work in parallel on each pair of homologs to ensure alignment along the full lengths of homolo...