A novel iTreg‐related signature for prognostic prediction in lung adenocarcinoma

Abstract

Lung adenocarcinoma (LUAD) is the most common subtype of lung cancer. Most patients are diagnosed at an advanced stage, therefore it is crucial to identify novel prognostic biomarkers for LUAD. As important regulatory cells, inducible regulatory T cells (iTregs) play a vital role in immune suppression and are important for the maintenance of immune homeostasis. This study explored the prognostic value and therapeutic effects of iTreg‐related genes in LUAD. Data for LUAD patients, including immune infiltration data, RNA sequencing data, and clinical features, were acquired from The Cancer Genome Atlas, Gene Expression Omnibus, and Tumor Immune Single‐cell Hub 2 databases. Immune‐related subgroups with different infiltration patterns and iTreg‐related genes were identified through univariate and multivariate Cox regression analyses and weighted correlation network analysis. Functional enrichment analyses were performed to explore the underlying mechanisms of iTreg‐related genes. A prognostic risk signature was constructed using Cox regression analysis with the least absolute shrinkage and selection operator penalty. The ESTIMATE algorithm was applied to determine the immune status of LUAD patients. We applied the constructed signature to predict chemosensitivity and performed single‐cell RNA sequencing analysis. The infiltration of iTregs was identified as an independent factor for predicting patient outcomes. We constructed a prognostic signature based on seven iTreg‐related genes (GIMAP5, SLA, MS4A7, ZNF366, POU2AF1, MRPL12, and COL5A1), which was applied to subdivide patients into high‐ and low‐risk subgroups. Our results revealed that patients in the iTreg‐related low‐risk subgroup had a better prognosis and possibly greater sensitivity to traditional chemotherapy. Our study provides a novel iTreg‐related signature to elucidate the mechanisms underlying LUAD prognosis and promote individualized chemotherapy treatment.

Identification of shared hub genes in lung cancer and rheumatoid arthritis patients using bioinformatics approaches

“…The GO and KEGG pathway enrichment analyses highlighted the significant roles of ossification, cytokine pathways, and immune pathways in both diseases. SLA has been identified as a potential prognostic marker for pulmonary malignancies, particularly in adenocarcinomas [12]. However, the role of SLA in the pathogenesis of rheumatoid arthritis (RA) remains unclear and warrants further experimental research.…”