Murine antibodies
S25-23, S25-26, and S25-5 derive from a common germ-line origin, and
all bind the Chlamydiaceae family-specific epitope αKdo(2→8)αKdo(2→4)αKdo
(where Kdo is 3-deoxy-α-d-manno-oct-2-ulosonic
acid) with high affinity and specificity. These antibodies recognize
the entire trisaccharide antigen in a linkage-dependent manner via
a groove composed largely of germ-line residues. Despite sharing identical
heavy and light chain genes, S25-23 binds the family-specific epitope
with nanomolar affinity, which is an order of magnitude higher than
that of S25-26, while S25-5 displays an affinity between those of
S25-23 and S25-26. We determined the high-resolution crystal structures
of S25-23 and S25-5 antigen binding fragments in complex with a pentasaccharide
derived from the LPS of Chlamydia and measured the
affinity of S25-5 for chlamydial LPS antigens using isothermal titration
microcalorimetry. The 1.75 Å resolution structure of S25-23 shows
how subtle conservative mutations Arg(L)-27E to lysine and Ser(H)-56
to threonine lead to an order of magnitude increase in affinity. Importantly,
comparison between previous S25-26 structures and the 1.99 and 2.05
Å resolution liganded and unliganded structures of S25-5, respectively,
shows how a Ser(L)-27E mutation results in an intermediate affinity
due to the reduced enthalpic penalty associated with complex formation
that would otherwise be required for arginine in this position. This
strategy allows for subtle adjustments in the combining site via affinity
maturation that have dramatic consequences for the affinity of an
antibody for its antigen.