Quantum Annealing (QA) is a metaheuristic for solving optimization problems in a time-efficient manner. Therefore, quantum mechanical effects are used to compute and evaluate many possible solutions of an optimization problem simultaneously. Recent studies have shown the potential of QA for solving such complex assignment problems within milliseconds. This also applies for the field of job shop scheduling, where the existing approaches however focus on small problem sizes. To assess the full potential of QA in this area for industry-scale problem formulations, it is necessary to consider larger problem instances and to evaluate the potentials of computing these job shop scheduling problems while finding a near-optimal solution in a time-efficient manner. Consequently, this paper presents a QA-based job shop scheduling. In particular, flexible job shop scheduling problems in various sizes are computed with QA, demonstrating the efficiency of the approach regarding scalability, solutions quality, and computing time. For the evaluation of the proposed approach, the solutions are compared in a scientific benchmark with state-of-the-art algorithms for solving flexible job shop scheduling problems. The results indicate that QA has the potential for solving flexible job shop scheduling problems in a time efficient manner. Even large problem instances can be computed within seconds, which offers the possibility for application in industry.