Here we report the results of a comprehensive biogeochemical monitoring of Rostherne Mere in 1998, including changes in dissolved oxygen, organic carbon and nitrogen, nitrate/nitrite, ammonia, Al, Na, S, K, Mg, Ca, Si, Fe, Mn, orthophosphate, particulate N & P, suspended solids, temperature, pH, chlorophyll-a and zooplankton. The results demonstrated the major influence of primary producers on the overall geochemical cycling of N, P and Si, and suggested that the significance of zooplankton might have been previously underestimated. For major anions and cations, however, the influence of biota on lake water concentrations appeared to be negligible, reflecting the fact that these chemicals were present far in excess of plankton requirements. Thus changes in concentrations of Ca, K, Na, Mg and S were rather limited and must have reflected changes in hydrological and meteorological parameters. K, however, demonstrated a transitional pattern, reflecting some influence of biological uptake. During the stratification period, the slow processes of bacterial decomposition in the hypolimnion gradually released chemicals contained in the materials accumulated in the bottom layer, remarkably increasing the concentrations of dissolved compounds of those elements present in amounts comparable with the pool stored in the sedimenting detritus (e.g. orthophosphate P, ammonia N, Si and DOC). The decomposition also resulted in a drop in the redox potential, followed by partial denitrification and chemical release from the sediments. The hypolimnion of the Mere was confirmed to remain at the stage of Mn release, characterised by accumulation of DOC, orthophosphates, ammonia and initial stages of denitrification. High levels of P released from the sediments during the stratification period suggest that the lake's recovery after sewage diversion might be further delayed.