The Youjiang metallogenic province (YMP) is a famous ore-concentrating area in South China, known for its substantial Carlin-type gold deposits, antimony deposits, and mercury deposits. Previous studies have yielded conflicting views regarding the ages of mineralization in this area, particularly regarding the occurrence of Yanshanian versus Indosinian ore-forming events during the Mesozoic era. To resolve these discrepancies, this study utilized in situ LA-ICP-MS U-Pb dating on carbonate minerals from the Lannigou Carlin-type Au deposit, the Lanmuchang Hg-(Tl) deposit, and the Sixiangchang Hg deposit to accurately determine their mineralization ages. Our results indicate that the three deposits formed at 137 ± 9 Ma, ~97 Ma, and 454 ± 21 Ma, respectively. By integrating previously reported geochronological data, we propose that the low-temperature Au-As-Sb-Hg-Tl deposits in the YMP were formed during two major periods, Late Triassic and Late Jurassic to Cretaceous, with the latter being more prevalent. Additionally, there was a Paleozoic hydrothermal mercury mineralization event at the northeastern edge of this region. These newly acquired data significantly enhance our understanding of multistage, low-temperature mineralization events in the YMP. Our study also demonstrates that in situ carbonate U-Pb dating is an excellent method for investigating the timing of low-temperature mineralization events.