A plastid phylogeny and character evolution of the Old World fern genus Pyrrosia (Polypodiaceae) with the description of a new genus: Hovenkampia (Polypodiaceae)

Zhou, Xin‐Mao; Zhang, Liang; Chen, Cheng-Wei; Li, Chunxiang; Huang, Yao‐Moan; Chen, De-Kui; Lu, Ngan Thi; Cicuzza, Daniele; Knapp, R.; Lương, Thiện Tâm; Nitta, Joel H.; Gao, Xin‐Fen; Zhang, Libing

doi:10.1016/j.ympev.2017.06.020

Cited by 13 publications

(17 citation statements)

References 47 publications

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“…This results was similar to the studies of Testo and Sundue 47 and Zhou et al . 35 , but different from the most studies that treat P. schimperiana as the basal group of Pyrrosia 44 , 46 , Zhou et al . 35 established a new genus Hovenkampia , and described its diagnostic characters different from Pyrrosia s.s. as: rhizomes completely parenchymatous; stomata polocytic; perispore thin, tightly adhering to the exospore surfaces.…”

Section: Discussionmentioning

confidence: 70%

“… 35 , but different from the most studies that treat P. schimperiana as the basal group of Pyrrosia 44 , 46 , Zhou et al . 35 established a new genus Hovenkampia , and described its diagnostic characters different from Pyrrosia s.s. as: rhizomes completely parenchymatous; stomata polocytic; perispore thin, tightly adhering to the exospore surfaces. As Hovenkamp 4 , Hennipman 10 and Uffelen and Hennipman 24 pointed that the characters above are all not synapomorphy of P. africana-group.…”

Section: Discussionmentioning

confidence: 70%

“…In addition, infrageneric classification of Pyrrosia was always closely linked to the recognition of the segregate genera Drymoglossum and Saxiglossum 5 , 8 , 29 – 32 . Drymoglossum and Saxiglossum are currently accepted as members of Pyrrosia , which has been confirmed by phylogenetic work 33 – 35 .…”

Section: Introductionmentioning

confidence: 65%

“…This clade is in the equivalent of P. costata-group of Hovenkamp 4 , Pyrrosia Clade of Zhou et al . 35 , and subg. Pyrrosia of Vasques et al .…”

Section: Discussionmentioning

confidence: 98%

“…Zhou et al . 35 segregated the P. africana - group as a new genus Hovenkampia Li Bing Zhang & X.M. Zhou, and recognized four clades in Pyrrosia based on five cp markers in the recently study.…”

Section: Introductionmentioning

confidence: 85%

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Phylogeny, historical biogeography and characters evolution of the drought resistant fern Pyrrosia Mirbel (Polypodiaceae) inferred from plastid and nuclear markers

Wei

Zhang

et al. 2017

Sci Rep

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Pyrrosia s.l. comprises ca. 60 species with a disjunct Africa/Asia and Australia distribution. The infrageneric classification of Pyrrosia s.l. is controversial based on the phylogenetic analyses of chloroplast markers and morphology. Based on the expanded taxon sampling of Pyrrosia s.l. (51 species), we investigated its phylogeny, biogeography, character evolution and environmental adaptation by employing five chloroplastid markers (rbcL, matK, psbA-trnH, and rps4 + rps4-trnS) and one single (low)-copy nuclear gene, LEAFY. Pyrrosia s.l. was divided into six major clades and eight subclades. Reticulate evolution was revealed both among clades and among species in Pyrrosia s.l. Ancestral character state optimization revealed high levels of homoplastic evolution of the diagnostic characters in Pyrrosia s.l., while the crassulacean acid metabolism pathway seems to have an independent origin. Molecular dating and biogeographic diversification analyses suggested that Pyrrosia s.l. originated no later than the Oligocene and the main clades diversified during the Oligocene and Miocene, with southern Asia, the Indo-China Peninsula and southwestern and southern China as the most likely ancestral areas. Transoceanic long-distance dispersal, rather than vicariance, contributed to the intercontinental disjunction. Diversification scenarios of Pyrrosia s.l. under geological movements and climate fluctuation are also discussed.

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Section: Discussionmentioning

confidence: 70%

Section: Discussionmentioning

confidence: 70%

Section: Introductionmentioning

confidence: 65%

“…This clade is in the equivalent of P. costata-group of Hovenkamp 4 , Pyrrosia Clade of Zhou et al . 35 , and subg. Pyrrosia of Vasques et al .…”

Section: Discussionmentioning

confidence: 98%

Section: Introductionmentioning

confidence: 85%

See 3 more Smart Citations

Phylogeny, historical biogeography and characters evolution of the drought resistant fern Pyrrosia Mirbel (Polypodiaceae) inferred from plastid and nuclear markers

Wei

Zhang

et al. 2017

Sci Rep

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A revised subfamilial classification of Polypodiaceae based on plastome, nuclear ribosomal, and morphological evidence

Wei

Zhang

2022

TAXON

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The polygrammoid fern family Polypodiaceae represents one of the most diversified epiphytic fern groups, with more than 1600 species distributed on all continents except Antarctica, with the highest species diversity in tropical and subtropical regions. Despite progress in recent phylogenetic studies of Polypodiaceae, the infrafamilial classification of this group of ferns is still problematic. Here, we explore the phylogenetic relationship within Polypodiaceae using plastid genome (plastome) and nuclear ribosomal cistron genome data obtained from high-throughput sequencing. Although genome skimming data strongly support the monophyly of many genera and clades of Polypodiaceae, relationships within some clades and along the backbone of the phylogeny remain incongruent between plastome and nuclear data. The explanation is possibly a factor of complex evolutionary history found in these clades, such as rapid radiation, incomplete lineage sorting, ancient hybridization, and recent introgression. Based on the concatenated dataset, our phylogenetic analyses support nine major clades in Polypodiaceae, which merit the recognition as subfamilies, Crypsinoideae, Grammitidoideae, Loxogrammoideae, Microsoroideae, Platycerioideae, Polypodioideae, Adetogrammoideae, Campyloneuroideae, and Serpocauloideae, while the latter three are separated from Polypodioideae as new subfamilies. All of these infrafamilial divisions, identified with molecular data, are further supported by non-molecular features including leaf dissection, venation, scales and paraphyses, soral features, and geographical distributions. Systematic and taxonomic discussions on the subfamilial treatment are also provided.

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Taxonomy in the Kunming Institute of Botany (KIB): Progress during the past decade (2008–2018) and perspectives on future development

Chen

Peng

2018

Plant Diversity

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The development of new taxonomical theories and approaches, particularly molecular phylogenetics, has led to the expansion of traditional morphology-based taxonomy into the concept of “integrative taxonomy.” Taxonomic knowledge has assumed greater significance in recent years, particularly because of growing concerns over the looming biodiversity crisis. Since its establishment in 1938, the Kunming Institute of Botany (KIB), which is located in Yunnan province in Southwest China, has focused attention on the taxonomy and conservation of the flora of China. For the forthcoming 80th anniversary of KIB, we review the achievements of researchers at KIB and their associates with respect to the taxonomy of land plants, fungi, and lichen. Major taxonomic advances are summarized for families of Calymperaceae, Cryphaeaceae, Lembophyllaceae, Neckeraceae, Polytrichaceae and Pottiaceae of mosses, Pteridaceae and Polypodiaceae of ferns, Taxaceae and Cycadaceae of gymnosperms, Asteraceae, Begoniaceae, Ericaceae, Euphorbiaceae, Gesneriaceae, Lamiaceae, Orchidaceae, Orobanchaceae, Poaceae, Theaceae and Urticaceae of angiosperms, Agaricaceae, Amanitaceae, Boletaceae, Cantharellaceae, Physalacriaceae Russulaceae, Suillaceae and Tuberaceae of fungi, and Ophioparmaceae and Parmeliaceae of lichens. Regarding the future development of taxonomy at KIB, we recommend that taxonomists continue to explore the biodiversity of China, integrate new theories and technologies with traditional taxonomic approaches, and engage in creative monographic work, with support from institutions, funding agencies, and the public.

show abstract

A plastid phylogeny and character evolution of the Old World fern genus Pyrrosia (Polypodiaceae) with the description of a new genus: Hovenkampia (Polypodiaceae)

Cited by 13 publications

References 47 publications

Phylogeny, historical biogeography and characters evolution of the drought resistant fern Pyrrosia Mirbel (Polypodiaceae) inferred from plastid and nuclear markers

Phylogeny, historical biogeography and characters evolution of the drought resistant fern Pyrrosia Mirbel (Polypodiaceae) inferred from plastid and nuclear markers

A revised subfamilial classification of Polypodiaceae based on plastome, nuclear ribosomal, and morphological evidence

Taxonomy in the Kunming Institute of Botany (KIB): Progress during the past decade (2008–2018) and perspectives on future development

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