A portable C++ library for memory and compute abstraction on multi‐core CPUs and GPUs

Abstract

We present a C++ library for transparent memory and compute abstraction across CPU and GPU architectures. Our library combines generic data structures like vectors, multi‐dimensional arrays, maps, graphs, and sparse grids with basic generic algorithms like arbitrary‐dimensional convolutions, copying, merging, sorting, prefix sum, reductions, neighbor search, and filtering. The memory layout of the data structures is adapted at compile time using C++ tuples with optional memory double‐mapping between host and device and the capability of using memory managed by external libraries with no data copying. We combine this transparent memory layout with generic thread‐parallel algorithms under two alternative common interfaces: a CUDA‐like kernel interface and a lambda‐function interface. We quantify the memory and compute performance and portability of our implementation using micro‐benchmarks, showing that the abstractions introduce negligible performance overhead, and we compare performance against the current state of the art in a real‐world scientific application from computational fluid mechanics.

Morphogen gradients are regulated by porous media characteristics of the developing tissue

“…We use the open-source C++ library OpenFPM for parallelizing the simulations [59]. OpenFPM data structures, which are generated at compile time using template meta-programming, hide communication from the application and are portable across CPU and GPU architectures [58].…”