The enzyme phosphofructokinase-1 (PFK-1) catalyzes the first committed step of glycolysis and is regulated by a complex array of allosteric effectors that integrate glycolytic flux with cellular bioenergetics. Here, we demonstrate the direct, potent, and reversible inhibition of purified rabbit muscle PFK-1 by low micromolar concentrations of long chain fatty acyl-CoAs (apparent K i ϳ1 M). Collectively, these results demonstrate that fatty acyl-CoA modulates phosphofructokinase activity through both covalent and noncovalent interactions to regulate glycolytic flux and enzyme membrane localization via the branch point metabolic node that mediates lipid flux through anabolic and catabolic pathways.Glycolysis occupies a central role in eukaryotic energy metabolism through the production of NADH and ATP to meet immediate cellular energy demands, the generation of glycerol 3-phosphate for the de novo synthesis of phospholipids and triglycerides, and the production of pyruvate that is converted to acetyl-CoA for subsequent utilization in the TCA cycle or for de novo fatty acid biosynthesis. Thus, glycolysis and lipid metabolic flux are interwoven metabolic networks that must be coordinately regulated to maintain cellular bioenergetic homeostasis. Although the ability of fatty acids to suppress glycolytic flux has been known for 50 years (1-4), the mechanisms by which metabolically active tissues undergo a rapid shift from glucose utilization to fatty acid oxidation during metabolic transitions remain incompletely understood. The increasing prevalence of obesity, diabetes, and the metabolic syndrome, in which there is increased reliance on fatty acid substrate at the expense of glucose (5-8), has renewed interest in the chemical mechanisms regulating substrate utilization during metabolic transitions.Previous work has suggested that glycolysis and fatty acid -oxidation are coordinately regulated by specific metabolites of each bioenergetic network (9 -11). A prevailing hypothesis to explain the regulation of glycolysis by fatty acids originally put forth by Randle and co-workers (3, 4) states that the availability and subsequent -oxidation of fatty acids results in the production of tricarboxylic acid cycle intermediates that down-regulate glycolysis. Specifically, acetyl-CoA generated from fatty acid -oxidation leads to the accumulation of citrate that is a potent inhibitor of phosphofructokinase, which catalyzes the rate-determining step in glycolysis. However, substantial experimental evidence suggests that the regulation of glycolytic flux involves the integration of complex networks that coordinately integrate metabolic transitions.Mammalian phosphofructokinase-1 (6-phosphofructo 1-kinase 3 ) catalyzes the first committed and rate-determining step of glycolysis and thus represents an essential metabolic control point or node for carbohydrate utilization. Accordingly, PFK-1 is subject to complex catalytic and allosteric regulation by multiple cellular metabolites, including AMP, ADP, ATP, fructose 2,6-bisphosph...