Background: The neurological and musculoskeletal pain symptoms should be taken seriously when dealing with the acute phase of COVID-19 patients. This study aims to explore the neurological and musculoskeletal pain symptoms among confirmed COVID-19 patients.Methods: A cross-sectional study was conducted from 1st July to 30th August at the Baquba teaching hospital, Diyala province, Iraq. Medical records of one hundred and twenty-three hospitalized COVID-19 patients have been investigated for neurological and musculoskeletal pain symptoms. Descriptive, bivariate, and multiple logistic regression were performed to predict the prevalence of pain symptoms. SPSS version 16 was recruited to analyze the data, and the statistically significant was considered at less than 0.05.Results: The mean age of respondents was 46.38 (+ 12.37). Most of the patients were males (60.2%), with mild severity of COVID-19 (59.3%), had not been vaccinated yet (78.0%), tobacco smokers (38.2%), and had a history of DM (43.3%) and HT (25.4%), respectively. More than half of patients (66, 53.7%) developed at least one pain symptom after confirming the diagnosis of COVID-19 infection. The highest Prevalence of pain symptoms was headache (43.9%), neuropathic pain (34.8%), generalized myalgia (31.8%), polyarthralgia (25.7%), and low back pain (22.7%). In multiple logistic regression, the patients aged 50 years and above (odds ratio (OR) = 10.577, 95% CI: 2.867 to 9.029, P <0.001), males (OR = 3.769, 95% CI: 2.826 to 8.593, P=0.027), presence of comorbidities (OR = 6.407, 95% CI: 1.820 to 3.557, P = 0.004), the severity of COVID-19 (moderate to severe) (OR = 10.229, 95% CI: 2.450 to 6.714, P=0.001), and tobacco smoking (OR = 4.225, 95% CI: 1.160 to 5.390, P=0.029), were significantly associated with the presence of neurological and musculoskeletal pain symptoms (p < 0.001).Conclusion: Much evidence suggests the emergence of neuropathic and musculoskeletal pain symptoms in the acute phase of COVID-19 infection. Therefore, priority should be given to such symptoms when clinicians tried to diagnose COVID-19 patients.