“…37 This is further complex by the fact that bacteria, such as S. pneumoniae, are surrounded by a capsule that helps the bacterium evade phagocytosis, the capsule contains polysaccharides (often including uronic acids) that provide mucoviscosity, lipopolysaccharides (LPS), adhesins, and siderophores, systems that allow the bacterium to uptake iron from the environment. 18 In addition, some of the bacterial species included in this study, such as P. stuartii, P. mirabilis, P. vulgaris, P. rettgeri, and H. alvei, are known to contain virulence factors. 9,38 The present study identified 1170 nonredundant peptides corresponding to 123 different virulence factors, including proteins described to perform a role in bacterial antibiotic resistance mechanisms, aid immune evasion, or constitute toxins (Supporting Information, Data S7).…”