A protozoan parasite identified by histology as a haplosporidian was detected in carpet shell clam Ruditapes decussatus from Spain during routine samplings. Analysis based on the sequence of the small subunit ribosomal RNA gene revealed that this organism was related to the haplosporidian group, mainly to Urosporidium. A specific probe was used for in situ hybridization studies to show the specificity of the amplified sequence.
KEY WORDS: Haplosporidian · Clam · Ruditapes decussatus
Resale or republication not permitted without written consent of the publisherDis Aquat Org 61: [89][90][91][92][93] 2004 2002. The animals (n = 184) were processed immediately after being received at the laboratory.Histology. Soft tissues were fixed in Davidson's fixative (Shaw & Battle 1957) for 24 h, and a transverse section approximately 5 mm thick including mantle, gonad, digestive gland, gills, kidney, and foot was excised from each clam. Tissue samples were embedded in paraffin, and 5 µm sections were stained with hematoxylin-eosin. The histological sections were observed under a light microscope (Nikon).Amplification of the 18S rRNA gene and sequencing. DNA from carpet shell clams was extracted using DNAzol (Invitrogen) following the recommended protocol.The 18S rRNA gene was amplified by polymerase chain reaction (PCR) using several pairs of conserved primers derived from known conserved regions of the 18S rRNA gene (Medlin et al. 1988, Novoa et al. 2002 (U1S: 5'-AACCTGGTT-GATCCTGCCAGT-3'; 336AS: 5'-GCTCCCTCTCC-GGAATCGAA-3'; Cas2AS: 5'-ACGGGCGGTGTTC-AAAGG-3'; U3S: 5'-GCTACCACATCCAAGGAA-3'; U4AS: 5'-GTCTCGTTCGTTAACGG-3'). PCR was performed in a total volume of 25 µl containing 1 µl 10 mM dNTP mix, 0.125 µl Taq polymerase (Roche), 2.5 µl Taq 10× buffer, 1.25 µl 25 mM MgCl 2 , 1.25 µl of each primer (100 µM) and 1 µl of DNA. Following an initial denaturation at 94°C, reactions were subjected to 40 cycles of initial denaturation at 94°C for 1 min, annealing at 50°C for 1 min and extension at 72°C for 2 min. A final extension of 10 min at 72°C was also carried out. PCR products were visualized on a 1% agarose gel stained with ethidium bromide. A 100 bp ladder standard (Amersham Pharmacia) was also included on the gel.PCR products were cloned directly in the vector pCR 2.1 (Invitrogen) following the standard protocol supplied by the manufacturers (TA Cloning Kit, Invitrogen) and then used to transform competent Escherichia coli TOP10 F'. Screening of clones carrying 18S rRNA-coding region fragments was performed by PCR adding the positive colony directly to the PCR mixture reaction using the vector's M13 forward primer. Positive clones were sequenced as described below in order to determine if the gene fragment corresponded to haplosporidians or to other organisms, mainly clams. PCR products were purified by digestion with the enzymes exonuclease I and shrimp phosphatase (SAP) (Amersham Pharmacia Biotech) for 1 h at 37°C. The enzymes were then denatured for 15 min at 80°C. The sequencing reactions of purified PCR prod...