This article introduces a frequency offset estimation optimization method based on pulse waveform for high dynamic communication systems under the condition of partial synchronization code loss caused by collision. This method is based on using synchronous codes for correlation calculations to calculate pulse frequency offset, and solves the problem of synchronous code loss and inability to estimate frequency offset under collision conditions, while occupying less receiver system resources. This method greatly improves the anti-interference ability of the system, meets the low latency requirements of networking systems, and meets the needs of modern warfare and electronic technology development.