The ParA and ParB protein families are well conserved in bacteria. However, their functions are still unclear. In Bacillus subtilis, Soj and Spo0J are members of these two protein families, respectively. A previous report revealed that replication initiated early and asynchronously in spo0J null mutant cells, as determined by flow cytometry. In this study, we examined the cause of this promotion of replication initiation. Deletion of both the soj and spo0J genes restored the frequency of replication initiation to almost the wild-type level, suggesting that production of Soj in the absence of Spo0J leads to early and asynchronous initiation of replication. Consistent with this suggestion, overproduction of Soj in wild-type cells had the same effect on replication initiation as in the spo0J null mutant, and overproduction of both Soj and Spo0J did not. These results indicate that when the ratio of Soj to Spo0J increases, Soj interferes with tight control of replication initiation and causes early and asynchronous initiation. Whereas replication initiation also occurred significantly earlier in the two spo0J mutants, spo0J14 and spo0J17, it occurred only slightly early in the sojK16Q mutant and was delayed in the sojG12V mutant. Although Soj localized to nucleoids in the spo0J mutants, the two Soj mutant proteins were distributed throughout the cell or localized to cell poles. Thus, interestingly, the promotion of replication initiation seems to correlate with localization of Soj to nucleoids. This may suggest that Soj inhibits transcription of some cell cycle genes and leads to early and asynchronous initiation of replication. In wild-type cells Spo0J counteracts this Soj function.The ParA and ParB protein families are widely conserved in bacteria and plasmids (47). These proteins were first analyzed in low-copy-number plasmids (including prophage) of Escherichia coli, such as F and P1, and were found to be essential for accurate partitioning of the plasmids (9, 17). The P1 ParA protein binds both ADP and ATP (7). The ATP-bound form interacts with the ParB-parS complex (parS:ParB-binding DNA sequence) and plays a direct role in partitioning (4). ParB stimulates a weak ATPase activity of ParA (8) and changes the ATP form to the ADP form that cannot interact with the ParB-parS complex. Thus, ParA-ADP is released from the ParB-parS complex and acts as repressor of the parAB operon by binding to the promoter region (4). The ParB protein was detected as foci within the cell, and its localization depended on ParA and parS (11), as expected from the biochemical data. Using a green fluorescent protein (GFP)-ParB fusion, Li and Austin (28) recently showed that P1 plasmid copies are suddenly separated into two daughter cells from the cell center immediately before cell division.In the case of the F plasmid, the biochemical activities of the ParA and ParB family members (SopA and SopB) are very similar to those of the P1 proteins (17). The cis-acting sopC region including the SopB-binding sequences was required for localizat...