Segregation of homologous chromosomes during meiosis depends on linkages (chiasmata) created by crossovers and on selective release of a subset of sister chromatid cohesion at anaphase I. DuringCaenorhabditis elegans meiosis, each chromosome pair forms a single crossover, and the position of this event determines which chromosomal regions will undergo cohesion release at anaphase I. Here we provide insight into the basis of this coupling by uncovering a large-scale regional change in chromosome axis composition that is triggered by crossovers. We show that axial element components HTP-1 and HTP-2 are removed during late pachytene, in a crossover-dependent manner, from the regions that will later be targeted for anaphase I cohesion release. We demonstrate correspondence in position and number between chiasmata and HTP-1/2-depleted regions and provide evidence that HTP-1/2 depletion boundaries mark crossover sites. In htp-1 mutants, diakinesis bivalents lack normal asymmetrical features, and sister chromatid cohesion is prematurely lost during the meiotic divisions. We conclude that HTP-1 is central to the mechanism linking crossovers with late-prophase bivalent differentiation and defines the domains where cohesion will be protected until meiosis II. Further, we discuss parallels between the pattern of HTP-1/2 removal in response to crossovers and the phenomenon of crossover interference.[Keywords: Meiosis; chromosome axes; crossover; sister chromatid cohesion; chromosome remodeling; crossover interference] Supplemental material is available at http://www.genesdev.org. Received May 12, 2008; revised version accepted August 18, 2008. In sexually reproducing organisms, diploid germ cells produce haploid gametes through the specialized cell division program of meiosis. At the onset of meiosis, DNA is replicated and sister chromatid cohesion (SCC) is established (Nasmyth and Schleiffer 2004). In contrast to mitotic cell cycles, this single round of meiotic DNA replication is followed by two rounds of cell division, the first segregating homologous chromosomes (homologs), and the second segregating sister chromatids (Petronczki et al. 2003). This pattern of segregation requires an extended prophase during which chromosomes must assemble meiosis-specific axial structures, locate, and align with their homologs, stabilize this alignment through assembly of the synaptonemal complex (SC), and undergo crossover recombination events between their DNA molecules (Page and Hawley 2003). Crossovers that form in this context play a crucial role in promoting meiotic chromosome segregation, as they collaborate with SCC (on domains flanking the crossover site) to form the basis of chiasmata, cytologically visible connections between the homologs that are revealed upon SC disassembly and structural remodeling of chromosomes during late prophase (Jones 1987). Chiasmata allow homologs to remain connected while orienting away from each other toward opposite poles of the metaphase I spindle. Subsequently, the SCC that maintains the co...