The neutral point of the distribution network is grounded with low resistance, which can quickly remove single‐phase grounding fault and effectively suppress overvoltage. However, the existing zero‐sequence overcurrent protection has a high setting value. In the case of large fault resistance and weak fault current, the existing protection methods may refuse to operate. Based on the waveform characteristics of the zero‐sequence current of each outgoing line in the distribution network, this article proposes a new method for single‐phase high resistance grounding fault protection in low resistance grounded distribution network, which combines cosine distance and improved K‐means algorithm. First, the cosine distance between zero‐sequence current of every two outgoing lines is obtained, and the cosine distance matrix used to describe the fault characteristics is constructed. Then the improved K‐means algorithm is used to cluster the row vectors of the cosine distance matrix to obtain the convergent cluster center and cluster label, so that the fault line can be determined. This protection method does not need to set the threshold value manually, and has strong ability to handle large fault resistance. It can effectively deal with noise interference and intermittent arc grounding fault, and still has good adaptability in scenarios such as change of fault initial phase angle, change of fault location, access of distributed generations and occurrence of two outgoing lines in phase to grounding fault. Finally, a model is built, and the effectiveness of the proposed method is proved by the simulation of grounding fault.