In the context of the increasing integration of Internet of Things technologies and the growing importance of data lakes, the need for robust cybersecurity measures to protect privacy without compromising data utility becomes key. Aiming to address the privacy–security challenge in such digital ecosystems, this study explores the application of Fully Homomorphic Encryption (FHE) using the Microsoft SEAL library. FHE allows for operations on encrypted data, offering a promising opportunity for maintaining data confidentiality during processing. Our research employs systematic experimental tests on datasets to evaluate the performance of homomorphic encryption in terms of CPU usage and execution time, executed across traditional PC configurations and a NVIDIA Jetson Nano device to assess the scalability and practicality of FHE in edge computing. The results reveal a performance disparity between computing environments, with the PC showing stable performance and the Jetson Nano revealing the limitations of edge devices in handling encryption tasks due to computational and memory constraints.