We introduce an encoding of the set theory of the B method using polymorphic types and deduction modulo, which is used for the automated verification of proof obligations in the framework of the BWare project. Deduction modulo is an extension of predicate calculus with rewriting both on terms and propositions. It is well suited for proof search in theories because it turns many axioms into rewrite rules. We also present the associated automated theorem prover Zenon Modulo, an extension of Zenon to polymorphic types and deduction modulo, along with its backend to the Dedukti universal proof checker, which also relies on types and deduction modulo, and which allows us to verify the proofs produced by Zenon Modulo. Finally, we assess our approach over the proof obligation benchmark provided by the BWare project.