A service discovery approach in support of Web service integration

Miled, Zina Ben; Mahoui, Malika; Gao, Ning; Lu, Lingma; Chen, J.; Ya, HE; Omran, B.A.

doi:10.1109/bibe.2004.1317326

Cited by 3 publications

(4 citation statements)

References 18 publications

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“…SIBIOS, the System for the Integration of Bioinformatics Services is an ontology based integration system enhanced with workflow capabilities [2,3]. The overall architecture of SIBIOS is depicted in Figure 1.…”

Section: Overview Of Sibios Integration Systemmentioning

confidence: 99%

“…SIBIOS [2] is a system that provides researchers with this framework. Although SIBIOS system provides some assistance through Service Discovery and service selection [3], it is still difficult to manually build consistently high-quality workflows. In this paper, we propose an approach to make SIBIOS system automate the workflow composition based on the users' requirements.…”

Section: Introductionmentioning

confidence: 99%

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The Automation of SIBIOS Workflow Composition

Xiao

Mahoui

Miled

et al. 2006

Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06)

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Building a high-quality bioinformatics workflow needs not only good biology knowledge, but also extensive knowledge of existing online bioinformatics services. To facilitate this task, we present a novel approach of automatic workflow composition in SIBIOS system. Our approach regards the task of workflow composition as a planning problem, and uses Graphplan as the solution planner. We extended Graphplan to allow users to specify particular services that they want to use in the workflow, as well as the order those services are used. Automatically generated workflows are used as a baseline for researchers, to be refined to meet their needs. This paper describes the theoretical design and practical evaluation of automatic workflow composition in SIBIOS.

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Section: Overview Of Sibios Integration Systemmentioning

confidence: 99%

Section: Introductionmentioning

confidence: 99%

The Automation of SIBIOS Workflow Composition

Xiao

Mahoui

Miled

et al. 2006

Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06)

Self Cite

View full text Add to dashboard Cite

show abstract

“…Moreover, general concepts such as those related to disease or literature information are also part of the shared vocabulary. Task-oriented ontologies such as Mygrid [57] and SIBIOS [58] are too complex for the purposes of Biofacets, as these ontologies are designed to support in-silico experiments, deploying both databases and analytical tools such as NCBI Blastn [59]. Leveraging on our experiences building BACIIS [56] and SIBIOS [58] ontologies, we adopted an incremental design of Biofacets ontology.…”

Section: Biofacets Ontology Designmentioning

confidence: 99%

“…Task-oriented ontologies such as Mygrid [57] and SIBIOS [58] are too complex for the purposes of Biofacets, as these ontologies are designed to support in-silico experiments, deploying both databases and analytical tools such as NCBI Blastn [59]. Leveraging on our experiences building BACIIS [56] and SIBIOS [58] ontologies, we adopted an incremental design of Biofacets ontology. More precisely, the purpose was not to provide a comprehensive ontology that will support all potential databases before starting to use Biofacets, but rather to provide an ontology structure that can be easily updated with new concepts.…”

Section: Biofacets Ontology Designmentioning

confidence: 99%