Keywords: Ab initio calculations / N-Acyldeoxycytidine / Bioorganic chemistry / Hydrogen bonds / NucleotidesOligodeoxynucleotides [11a−i: d(T 6 XT 6 )] incorporating various N-acyldeoxycytidine derivatives (X) have been synthesized through use of a new DBU-labile 4,5-dichlorophthaloyl linker on polymer supports. The hybridization capabilities of these oligonucleotides with the complementary d(A 6 GA 6 ) were examined with the aid of Tm experiments. It turned out that the Tm values of DNA duplexes decreased significantly with an increase in the number of the methylene groups in the aliphatic acyl group introduced into one strand of the DNA duplex. Ab initio MO calculations and 1 H NMR analysis suggested that the acyl groups in the tested derivatives were oriented in a manner that made the formation of conventional Watson−Crick-type (W−C-type) base pairs with the guanine residue possible, with the help of an intramolecular