This paper deals with two domain decomposition methods for two dimensional linear Schrödinger equation, the Schwarz waveform relaxation method and the domain decomposition in space method. After presenting the classical algorithms, we propose a new algorithm for the Schrödinger equation with constant potential and a preconditioned algorithm for the general Schrödinger equation. These algorithms are studied numerically. The experiments show that the two new algorithms improve the convergence rate and reduce the computation time. Besides the traditional Robin transmission condition, we also propose to use a newly constructed absorbing condition as the transmission condition.