Inherited mutations in BRCA1 and BRCA2 lead to significantly increased risks of breast and ovarian cancer. We used epidemiologic methods to evaluate the relative risks of breast cancer vs. ovarian cancer among women of Ashkenazi Jewish ancestry with inherited mutations in BRCA1 or BRCA2. The cancer of a family's index case (i.e., breast cancer vs. ovarian cancer) was significantly associated with site-specific risks of cancer in relatives known to carry mutations in BRCA1 or BRCA2. Specifically, breast cancer risks were higher among relatives of breast cancer index cases compared with relatives of ovarian cancer index cases [hazard ratio (HR) ؍ 3.0, P < 0.001 for BRCA1 carriers and HR ؍ 4.8, P ؍ 0.017 for BRCA2 carriers], and ovarian cancer risks were higher among relatives of ovarian cancer index cases compared with relatives of breast cancer index cases (HR ؍ 7.2, P ؍ 0.001 for BRCA1 carriers and HR ؍ 15.8, P ؍ 0.018 for BRCA2 carriers). Breast and ovarian cancer risks also increased with more recent year of birth. For each later decade of birth, risk increased 1.2-fold (P ؍ 0.03). Effects of cancer site of the index case and of birth cohort were independent. These results suggest that both genetic and nongenetic factors modify cancer risks among BRCA1 and BRCA2 mutation carriers, and that genetic modifiers and other familial factors may influence risk specifically for either breast or ovarian cancer.breast cancer ͉ ovarian cancer ͉ penetrance ͉ hereditary cancer I n the decade since BRCA1 (MIM 113705) and BRCA2 (MIM 600185) were identified as susceptibility genes for breast and ovarian cancer, testing of these genes has become part of clinical practice, and thousands of women worldwide have been identified as carriers of mutations in BRCA1 or BRCA2. Women with cancer-predisposing mutations are offered intensive surveillance for early cancer detection and͞or preventive measures. Although prevention of breast and ovarian cancer in carriers is highly effective, it primarily involves prophylactic surgery: oophorectomy and risk-reduction mastectomy (refs. 1 and 2 and reviewed in ref.3). In considering the best course of action for mutation carriers, it is essential to have accurate estimates of possible outcomes that include all genetic and nongenetic factors influencing risk.Breast cancer risks associated with BRCA1 and BRCA2, and ovarian cancer risk associated with BRCA1, have been shown to be higher in more recent birth cohorts (4-6). These secular (time) trends likely reflect nongenetic influences because risk changed within families among individuals with the same mutations. Meta-analysis further suggested that cancer risk among BRCA1 and BRCA2 carriers was influenced by the site of cancer (i.e., breast cancer or ovarian cancer) in the index case (5). This observation suggested that genetic modifiers, alleles of genes other than BRCA1 or BRCA2, might affect outcome in carriers of BRCA1 or BRCA2 mutations.The goal of this study was to investigate the influences of cancer site in the index case ...