We study the negative gradient flow of the spinorial energy functional (introduced by Ammann, Weiß, and Witt) on 3-dimensional Berger spheres. For a certain class of spinors we show that the Berger spheres collapse to a 2-dimensional sphere. Moreover, for special cases, we prove that the volumenormalized standard 3-sphere together with a Killing spinor is a stable critical point of the volume-normalized version of the flow. Our results also include an example of a critical point of the volume-normalized flow on the 3-sphere, which is not a Killing spinor.