The interferon-induced serine/threonine protein kinase (PKR) has an essential role in cell survival and cell death after viral infection and under stress conditions, but the host genes involved in these processes are not well defined. We used human cDNA microarrays to identify, in infected cells, genes differentially expressed after PKR expression and analyzed the requirement of catalytic activity of the enzyme. To express PKR, we used vaccinia virus (VV) recombinants producing wild type PKR (VV-PKR) and the catalytically inactive mutant K296R (VV-PKR-K296R). Most regulated genes were classified according to biological function, including apoptosis, stress, defense, and immune response. Transcriptional changes detected by microarray analysis were confirmed for selected genes by quantitative real time reverse transcription PCR. A total of 111 genes were regulated specifically by PKR catalytic activity. Of these, 97 were up-regulated, and 14 were downregulated. The ATF-3 transcription factor, involved in stress-induced -cell apoptosis, was up-regulated. Activation of endogenous PKR with a VV mutant lacking the viral protein E3L (VV⌬E3L), a PKR inhibitor, triggered an increase in ATF-3 expression that was not observed in PKR ؊/؊ cells. Using null cells for ATF-3 and for the p65 subunit of NF-B, we showed that induction of apoptosis by PKR at late times of infection was dependent on ATF-3 expression and regulated by NF-B activation. Here, we identified human genes selectively induced by expression of active PKR in infected cells and linked ATF-3 to a novel mechanism used by PKR to induce apoptosis.The double-stranded RNA (dsRNA) 4 -dependent protein kinase (PKR) is a key mediator in the antiviral effects of interferon (IFN) and a dynamic participant in apoptosis induced by various stimuli (1) (reviewed in Ref.2). PKR controls cell processes, such as growth (3) differentiation (4), apoptosis (5, 6), stress response (7), anti-tumor activity (8, 9), and antiviral functions (10, 11). After PKR activation, the initiation of protein synthesis is inhibited by phosphorylation of the ␣ subunit of the eukaryotic initiation factor 2 (eIF-2␣) by PKR (12). This kinase regulates the activation of several transcription factors involved in virus-induced apoptosis (13), including p53 (14), IRF-1 (15), and IRF-3, and activation of c-Jun (16). By regulating the expression of genes involved in cell proliferation, NF-B induction is important in mediating PKR function (16). NF-B activation by PKR also triggers production of 17), an essential component in PKR functionality.The genes involved in PKR-induced apoptosis in infected human cells have not been defined. We previously described an isopropyl--D-thiogalactopyranoside-inducible VV system in which PKR expression triggers apoptosis (5) (for a review, see Ref. 18). When PKR was expressed, the antiviral action against VV and vesicular stomatitis virus provoked a translational block by phosphorylation of eIF-2␣ and triggered NF-B activation through the IB kinase complex (5,10,11,19,20)....