Methionine (Met) 4 is one of the two amino acids in proteins that are the most susceptible to oxidation by reactive oxygen species, forming Met-O (1). Prior to 2007, two families of methionine-sulfoxide reductase (Msr) enzymes, called MsrA and -B were known to reduce Met-O back into Met (2, 3). The MsrA family reduces the S isomer at the sulfoxide function, whereas MsrB is specific for the R isomer. Both Msrs, which reveal distinct unrelated folds, were shown to reduce more efficiently a Met-O within a polypeptide chain. Therefore, Msrs are repair enzymes that play important roles in the protection of cells against oxidative stress (3-5).The catalytic mechanism of MsrA and MsrB is now well documented. For most MsrAs and MsrBs (i.e. those possessing a recycling Cys), the mechanism comprises three steps: a reductase step that leads to formation of a sulfenic acid intermediate on a catalytic Cys (6), a second step in which a disulfide bond is formed between the catalytic Cys and a recycling Cys, and finally, a step in which the intradisulfide bond is reduced by thioredoxin (Trx) or a Trx-like protein (7). A catalytic residue (i.e. Glu 94 in MsrA and His 103 in MsrB) was characterized, one of whose major roles is to protonate the oxygen of the sulfoxide function (8, 9). In all of the MsrAs and MsrBs studied to date, the reduction of the disulfide bond is rate-limiting, whereas the formation of the sulfenic acid intermediate is rate-determining in the process leading to intradisulfide bond formation. In other words, in the absence of Trx, only the intradisulfide intermediate accumulates.Recently, a third family of Msr, named fRMsr, was discovered (10). The fRMsrs exhibit a GAF-type fold. GAF domains are one of the largest and most widespread domains found in all kingdoms of life. They are dimeric and are generally arranged in tandem in modular proteins to provide a large variety of regulation functions. However, most of the functions of GAF domains remain to be studied in detail. The fRMsr is the first case of a GAF domain that bears a catalytic activity. The fRMsrs are present in eubacteria and unicellular eukaryotes (11). The family displays a methionine-sulfoxide reductase activity, reducing selectively free Met-O with an R configuration at the sulfoxide (10). Such a function led Lowther and co-workers (10) to propose that Met-R-O can represent a signaling molecule in response to oxidative stress.Only the crystal structures of fRMsr from Escherichia coli and Saccharomyces cerevisiae have been solved to date, without substrate (12, 13). Both structures are described as being composed of six -strands, four ␣-helices, and two prominent loops, loop 1 and loop 2, located on the surface of the protein * This work was supported by the CNRS, the University of Nancy I, and the IFR ; E-mail: Guy.Branlant@maem.uhp-nancy.fr. 4 The abbreviations used are: Met, methionine; Met-O, methionine sulfoxide (DL-Met-R,S-O); MES, 2-(N-morpholino)ethanesulfonic acid; 2-PDS, 2,2Ј-dithiodipyridine; DTNB, 5,5Ј-dithiobis(2-nitro)benzoate; ...