An endonuclease activity that reacts with x-irradiated DNA is present in extracts of E. coli. By using centrifugal methods to monitor the conversion of the supercoiled, circular double-stranded DNA for phage OX-174 (replicative form) or PM2 to the relaxed circular form it was possible to quantitate the rate of radiation induced endonuclease-sensitive sites in the DNA. For every single-strand break induced by x-rays under aerobic irradiation conditions, there is approximately one induced site sensitive to this endonuclease activity. Under irradiation conditions (addition of potassium iodide) that dramatically reduce rates of single-strand breaks and "alkalilabile" lesions, the number of endonuclease-sensitive sites relative to single-strand breaks increases approximately 4-fold. This nuclease is present in several strains of E. coli B and K12, including mutants deficient in DNA polymerase I, recombination gene products (rec mutants), ultraviolet light incision enzyme (uvrA mutant), and endonuclease II. It is suggested that this endonuclease may be involved in an excision repair process for damages incurred in DNA by ionizing radiation.It has been apparent for a number of years that bacteria repair damages induced by ionizing radiation. Most of the evidence for this has been genetic; that is, mutant strains of bacteria have been isolated which apparently lack repair systems.The most readily detectable lesions produced by ionizing radiation are strand breaks. Single-strand breaks can be physically reconstituted in Escherichia coli B/r but not in radiosensitive B,-, (1) or recA (2) mutants. DNA polymerase I has been shown to be involved in a rapid repair system of single-strand breaks (3) as well as in x-ray stimulated repair synthesis in toluene-treated Bacillis subtilis cells (4). A slower recombinational repair of single-strand breaks is dependent upon the recA gene product (3). Polynucleotide ligase under certain in vitro conditions has been shown to seal single-strand breaks induced by x-rays (5) and has been indirectly implicated in repair synthesis in the B. subtilis toluenized cell system (4).Comparisons between physical studies on strand breakage and bacteriophage lethality (6-9) have led to the hypothesis that damages other than strand breakage, such as base and sugar damages, contribute to lethality induced by ionizing radiation. Hariharan and Cerutti have described a radiolysis product of thymine which appears in the acid-soluble fraction during post-irradiation incubation of M1icrococcus radiodurans (10), thus indicating a possible excision-type repair mechanism for base damages. Also, extracts of .If. luteus exhibit endoAbbreviations: UV, ultraviolet; RF, replicative form. * Present address: Cellular and Molecular Radiobiology Group, H-9, Los Alamos Scientific Laboratory, Los Alamos, N.MA. 87544. 1997 nuclease activity for DNA irradiated in vivo (11) or in vitro (12) by y-rays. Recently Wilkins has shown that E. coli DNA y-irradiated in vivo possesses sites sensitive to the .If. luteus enz...